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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.043300.1 | ||||||||
Common Name | Csa_6G504650, LOC101207689 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | SRS | ||||||||
Protein Properties | Length: 332aa MW: 35897.3 Da PI: 7.45 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 229.4 | 6.4e-71 | 105 | 261 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsst 89 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerq++laa+++++ +++ ++++kr+r ++s+l++t Cucsa.043300.1 105 GGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHHHqqqlqlhgGDNNPKRHR---DYNSSSLACT 196 5789****************************************************99988877767777544444444444...569999**** PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++++ le+ ++P+e++s+avfrcvrvss dd ++++aYqtav+igGhvfkGiLydqG+e+ Cucsa.043300.1 197 LIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTDDQYAYQTAVNIGGHVFKGILYDQGPEN 261 ***************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-66 | 107 | 260 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.1E-27 | 109 | 151 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.4E-27 | 212 | 259 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048479 | Biological Process | style development | ||||
GO:0048480 | Biological Process | stigma development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MSGFFTLGGG GGGRDEEQNN NRPNQFIHPP PDSSLFWYKA GNVELWQQQQ QQQHHHHHQE 60 QPLFQTQSRT TTTTTPYSAP LAVRNSDESS SRSGNFMMIS SGSGGGGISC QDCGNQAKKD 120 CSHMRCRTCC KSRGFHCETH VKSTWVPAAK RRERQDKLAA LQTHHHHHHQ QQLQLHGGDN 180 NPKRHRDYNS SSLACTLIPT NNNTSGLEIG NFPAELNSPA VFRCVRVSSA DDTDDQYAYQ 240 TAVNIGGHVF KGILYDQGPE NNYIPPGETS SGGGGSSSGV QPLNFIAGAA DATTGSGGST 300 AALPLLDPSS LYSTPLNSFM AGTQFFLPPR S* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00613 | PBM | Transfer from AT3G51060 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149998.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9SD40 | 4e-82 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A0A0KGL4 | 0.0 | A0A0A0KGL4_CUCSA; Uncharacterized protein | ||||
STRING | POPTR_0007s13610.1 | 1e-85 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-71 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.043300.1 |
Entrez Gene | 101207689 |
Publications ? help Back to Top | |||
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